| 1 |
The genome of the Western clawed frog Xenopus tropicalis |
1001 |
2010 |
| 2 |
Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model |
321 |
2013 |
| 3 |
A high-resolution enhancer atlas of the developing telencephalon |
295 |
2013 |
| 4 |
Chromatin decompaction by the nucleosomal binding protein HMGN5 impairs nuclear sturdiness |
161 |
2015 |
| 5 |
Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes |
134 |
2011 |
| 6 |
Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex |
112 |
2014 |
| 7 |
Global gene expression analysis of murine limb development |
108 |
2011 |
| 8 |
Genome-wide identification of conserved regulatory function in diverged sequences |
94 |
2011 |
| 9 |
Analysis of microRNA and gene expression profiles in multiple sclerosis: integrating interaction data to uncover regulatory mechanisms |
82 |
2016 |
| 10 |
Human T |
74 |
2023 |
| 11 |
Subpallial enhancer transgenic lines: a data and tool resource to study transcriptional regulation of GABAergic cell fate |
66 |
2016 |
| 12 |
A dispensable chromosome is required for virulence in the hemibiotrophic plant pathogen Colletotrichum higginsianum |
64 |
2018 |
| 13 |
Identification of Prognostic Biomarkers by Combined mRNA and miRNA Expression Microarray Analysis in Pancreatic Cancer |
64 |
2018 |
| 14 |
An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo |
62 |
2019 |
| 15 |
CRISPR/Cas9-Mediated Knock-Out of KrasG12D Mutated Pancreatic Cancer Cell Lines |
62 |
2019 |
| 16 |
Sost and its paralog Sostdc1 coordinate digit number in a Gli3-dependent manner |
60 |
2013 |
| 17 |
Effects of HMGN variants on the cellular transcription profile |
54 |
2011 |
| 18 |
AGenDA: homology-based gene prediction |
51 |
2003 |
| 19 |
A machine learning approach for identifying novel cell typeâspecific transcriptional regulators of myogenesis |
44 |
2012 |
| 20 |
Sequence signatures extracted from proximal promoters can be used to predict distal enhancers |
39 |
2013 |
| 21 |
Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements |
39 |
2009 |
| 22 |
Proximity, interpenetration, and sympatry networks: a reply to Dos Santos et al |
36 |
2009 |
| 23 |
Differences in embryo quality are associated with differences in oocyte composition: a proteomic study in inbred mice |
33 |
2015 |
| 24 |
Genomic analysis of transcriptional networks directing progression of cell states during MGE development |
27 |
2018 |
| 25 |
Cancer Is Associated with Alterations in the Three-Dimensional Organization of the Genome |
25 |
2019 |
| 26 |
AGenDA: gene prediction by cross-species sequence comparison |
23 |
2004 |
| 27 |
An RNA-Seq-Based Framework for Characterizing Canine Prostate Cancer and Prioritizing Clinically Relevant Biomarker Candidate Genes |
23 |
2021 |
| 28 |
Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control |
22 |
2012 |
| 29 |
Comparative computational analysis of pluripotency in human and mouse stem cells |
21 |
2015 |
| 30 |
Independent transposon exaptation is a widespread mechanism of redundant enhancer evolution in the mammalian genome |
21 |
2020 |
| 31 |
TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability |
21 |
2015 |
| 32 |
Comparative High-Resolution Transcriptome Sequencing of Lymphoma Cell Lines and de novo Lymphomas Reveals Cell-Line-Specific Pathway Dysregulation |
20 |
2018 |
| 33 |
The Proteome, Not the Transcriptome, Predicts that Oocyte Superovulation Affects Embryonic Phenotypes in Mice |
20 |
2015 |
| 34 |
Suitability of ultrasound-guided fine-needle aspiration biopsy for transcriptome sequencing of the canine prostate |
19 |
2019 |
| 35 |
Clare: Cracking the LAnguage of regulatory elements |
18 |
2012 |
| 36 |
Evolutionary conserved networks of human height identify multiple Mendelian causes of short stature |
17 |
2019 |
| 37 |
T3E: a tool for characterising the epigenetic profile of transposable elements using ChIP-seq data |
17 |
2022 |
| 38 |
Btn2a2 regulates ILC2âT cell cross talk in type 2 immune responses |
16 |
2022 |
| 39 |
Identification and computational analysis of gene regulatory elements |
16 |
2015 |
| 40 |
How enhancers regulate wavelike gene expression patterns |
15 |
2023 |
| 41 |
Disregarding multimappers leads to biases in the functional assessment of NGS data |
13 |
2024 |
| 42 |
BTK and PI3K Inhibitors Reveal Synergistic Inhibitory Anti-Tumoral Effects in Canine Diffuse Large B-Cell Lymphoma Cells |
12 |
2021 |
| 43 |
Convalescent COVID-19 Patients Without Comorbidities Display Similar Immunophenotypes Over Time Despite Divergent Disease Severities |
9 |
2021 |
| 44 |
Evaluation of the Synergistic Potential of Simultaneous Pan-or Isoform-Specific BET and SYK Inhibition in B-Cell Lymphoma: An In Vitro Approach |
9 |
2022 |